References on DNA Microarrays

The following references all describe work by the Pat Brown Lab with fluorescent cDNA microarrays. The most recent paper on the list describes their work on diauxic shift in yeast; the data set from this study is available online.

Numerous papers on arrays have been published since I originally made this list. A good starting point for more recent work is the January 1999 special supplement to Nature Genetics volume 21, entitled "The Chipping Forecast."

• D. Shalon and S. J. Smith and P. O. Brown (1996). Genome Research 6(7):639-45.
• J. DeRisi, L. Penland, and P. O. Brown (1996). Nature Genetics 14:457-60.
• M. Schena, D. Shalon, R. W. Davis, and P. O. Brown (1995). Science 270:467-70.
• M. Schena, D. Shalon, R. Heller, A. Chai, P. O. Brown, and R. W. Davis (1996). Proc Nat Acad Sci 93:10614-9.
• J. DeRisi, V. R. Iyer, and P. O. Brown (1997). Science 278(5338):680.

For a good description of an alternative arraying technology based on radioactive labeling, see these two papers:

• C. Nguyen, D. Rocha, S. Granjeaud, M. Baldit, K. Bernard, P. Naquet, and B. R. Jordan (1995). Genomics 29:207-16.
• K. Bernard, N. Auphan, S. Granjeaud, G. Victoreo, A. Schitt-Verhust, B. R. Jordan, and C. Nguyen (1996). Nucleic Acids Research 24(8):1435-42.

A recent survey on the genetically heterogeneous basis of prostate cancer, which illustrates the value of investigating many different genes at once, is

• J. Dong and W. B. Isaacs and J. T. Isaacs (1997). Current Opinion in Biology 9:101-107.

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