Welcome to the home page for BIOL 5496/CSE 7800, the Computational Molecular Biology Journal Club. The Journal Club meets Tuesdays at 10:30 AM in 4515 McKinley, Rm 4212.
Your course masters are Jeremy Buhler and Gary Stormo.
Participants in the Journal Club present recent published research in the areas of computational molecular biology, systems biology, and bioinformatics. Every student receiving credit for participation must present a paper at one meeting of the Journal Club and must otherwise participate as described in the course overview. Other students, postdocs, faculty, and staff are welcome to attend and participate.
Announcements of upcoming meetings will be made via the mailing list email@example.com. Please ask one of the course masters if you want to join the list.
|Aug 29||Organizational Meeting|
|Sep 5||Jeff Hansen||MJ Chaisson and G Tesler. "Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory." BMC Bioinformatics 13:238, 2012.|
|Sep 12||Dan Cui Zhou||K Berlin, S Koren, C-S Chin, JP Drake, JM Landolin, and AM Phillippy. "Assembling large genomes with single-molecule sequencing and locality-sensitive hashing." Nature Biotechnology 33:623-630, 2015.|
|Sep 19||Zach Beller||MJ Chaisson, J Huddleston, MY Dennis, MH Sudmant, et al. "Resolving the complexity of the human genome using single-molecule sequencing." Nature 517:608-611, 2015.|
|Sep 26||Chris Chermside-Scabbo|
|Oct 3||Robert Chen||deep learning for phenotype prediction|
|Oct 10||Jeremy Buhler?|
|Oct 17||Fall Break -- no class|
|Oct 24||Liang-Bo Wang|
|Oct 31||Mike Toomey|
|Nov 7||Yiming Kang||using regulatory networks to infer impact of mutations|
|Nov 14||Nicolette Laird|
|Nov 28||Cynthia Ma|
|Dec 5||Miro Gavin|