Package kmer.core.results

Class AbstractMapKMerResults<T>

java.lang.Object

kmer.core.results.AbstractMapKMerResults<T>

All Implemented Interfaces:

KMerResults

Direct Known Subclasses:

IntegerMapKMerResults, LongMapKMerResults, StringMapKMerResults

public abstract class AbstractMapKMerResults<T>
extends Object
implements KMerResults

Author:

Dennis Cosgrove

Constructor Summary

Constructors

Constructor	Description
AbstractMapKMerResults(int k, Map<T,Integer> map, KMerCodec<T> codec)

Method Summary

Modifier and Type	Method	Description
Iterable<KMerResult>	encounters()
int	lookupCount(byte[] kMer)
Map<T,Integer>	map()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AbstractMapKMerResults

public AbstractMapKMerResults(int k,
 Map<T,Integer> map,
 KMerCodec<T> codec)

Method Details

map

public Map<T,Integer> map()

encounters

public Iterable<KMerResult> encounters()

Specified by:

encounters in interface KMerResults

lookupCount

public int lookupCount(byte[] kMer)

Specified by:

lookupCount in interface KMerResults