Package kmer.core

Interface KMerCounter

All Known Subinterfaces:
BalancedKMerCounter, ConcurrentMapKMerCounter<K>
All Known Implementing Classes:
AbstractArrayKMerCounter, AtomicIntegerArrayKMerCounter, IntArrayKMerCounter, LongConcurrentMapKMerCounter, StringConcurrentMapBalancedKMerCounter, StringConcurrentMapUnbalancedKMerCounter, StringMapKMerCounter
public interface KMerCounter
A "counter" of k-mers. This interface's only method returns a KMerCount object, which can then be used to iterate over the encountered k-mers and query counts of an individual k-mer.
Author:
Dennis Cosgrove

  • Method Summary

    Modifier and Type
    Method
    Description
    KMerResults
    parse(List<byte[]> sequences, int k)