Package kmer.core

Interface KMerCount

All Superinterfaces:
java.lang.Iterable<byte[]>
All Known Implementing Classes:
AtomicIntegerArrayKMerCount, ByteArrayRangeMapKMerCount, IntArrayKMerCount, IntegerMapKMerCount, LongMapKMerCount, MapKMerCount, StringMapKMerCount

public interface KMerCount
extends java.lang.Iterable<byte[]>
Author:
Dennis Cosgrove (http://www.cse.wustl.edu/~cosgroved/)
  • Method Summary

    Modifier and Type Method Description
    int getCount​(byte[] kMer)
    Gets the number of times the given k-mer appeared in the corresponding chromosome.

    Methods inherited from interface java.lang.Iterable

    forEach, iterator, spliterator
  • Method Details

    • getCount

      int getCount​(byte[] kMer)
      Gets the number of times the given k-mer appeared in the corresponding chromosome.
      Parameters:
      kMer - the k-mer to look for
      Returns:
      the number of times this k-mer was counted