Table 3. Summary of the prediction
results on individual RNA sequences.
|
RNA |
MWM |
PKNOTS |
ILM |
||||||
|
TP (SS) |
SP |
K |
TP (SS) |
SP |
K |
TP (SS) |
SP |
K |
|
|
HIV-1-RT |
11(100.0) |
84.6 |
1/1 |
11(100.0) |
100.0 |
1/1 |
11(100.0) |
100.0 |
1/1 |
|
TYMV |
24(100.0) |
63.2 |
1/1 |
24(100.0) |
96.0 |
1/1 |
24(100.0) |
82.8 |
1/1 |
|
TMV-3'-up |
17(68.0) |
41.5 |
1/3 |
13(52.0) |
59.1 |
0/3 |
20(80.0) |
80.0 |
2/3 |
|
TMV-3'-down |
25(73.5) |
49.0 |
0/2 |
33(97.0) |
97.0 |
2/2 |
26(76.5) |
68.4 |
1/2 |
|
HDV |
19(67.8) |
45.2 |
0/1 |
24(85.7) |
75.0 |
1/1 |
28(100.0) |
82.4 |
1/1 |
|
Anti-HDV |
17(70.8) |
38.6 |
1/1 |
23(95.8) |
69.7 |
1/1 |
24(100.0) |
66.7 |
1/1 |
|
TP = number of correctly
predicted base-pairs SS = 100 X TP / EP SP = 100 X TP/(EP+FP) K = (number of pseudoknots correctly predicted) / (expected number of pseudoknots) EP = expected number of
base-pairs in the reference structure FP
= number of predicted base-pairs that do not exist in the reference structure |
|||||||||