Prediction results legend pp - predicted # of base-pairs cp - predicted # of base-pairs that are correct incp - predicted # of base-pairs that are incorrect pu - predicted # of unpaired bases cu - predicted # of unpaired bases that are correct incu - predicted # of unpaired bases that are incorrect aaaa and bbbb represent that the base-pairing partner is the same as expected. Pairing partner 0 means unpaired. true pairs: 50 true unpairs: 110 pp cp incp pu cu incu ilm 73 41 32 64 58 6 mwm 98 32 66 14 9 5 telo.human.bpseq ilm.pairs.nogap mwm.pairs.nogap 1 0 aaaa 43 2 0 aaaa 7 3 0 11 8 4 0 10 11 5 0 9 9 6 0 aaaa 10 7 0 aaaa 2 8 0 aaaa 3 9 0 5 5 10 0 4 6 11 0 3 4 12 0 aaaa 19 13 0 aaaa 17 14 0 aaaa bbbb 15 0 210 41 16 0 209 40 17 0 aaaa 13 18 208 aaaa bbbb 19 207 aaaa 12 20 206 aaaa 0 21 205 aaaa bbbb 22 204 aaaa bbbb 23 203 aaaa 88 24 202 aaaa bbbb 25 201 aaaa bbbb 26 200 aaaa 38 27 199 aaaa bbbb 28 198 aaaa 36 29 197 aaaa 185 30 196 aaaa bbbb 31 195 aaaa 191 32 0 194 42 33 191 190 0 34 190 0 154 35 189 aaaa bbbb 36 188 aaaa 28 37 187 aaaa bbbb 38 0 61 26 39 0 60 162 40 0 59 16 41 0 58 15 42 0 aaaa 32 43 0 aaaa 1 44 0 aaaa 170 45 0 aaaa 71 46 0 aaaa 188 47 0 aaaa bbbb 48 0 aaaa 53 49 0 aaaa 113 50 0 aaaa bbbb 51 0 aaaa bbbb 52 0 aaaa bbbb 53 0 aaaa 48 54 0 aaaa 115 55 0 aaaa 101 56 0 aaaa 87 57 0 aaaa 184 58 0 41 126 59 0 40 192 60 0 39 200 61 0 38 159 62 0 aaaa 133 63 0 aaaa 160 64 0 145 145 65 144 aaaa 74 66 143 aaaa bbbb 67 142 aaaa bbbb 68 140 aaaa 150 69 139 aaaa bbbb 70 138 aaaa bbbb 71 137 aaaa 45 72 136 aaaa bbbb 73 0 aaaa 131 74 0 aaaa 65 75 0 186 134 76 0 185 177 77 0 184 164 78 131 0 0 79 130 0 bbbb 80 129 174 bbbb 81 128 173 bbbb 82 127 172 bbbb 83 0 aaaa 171 84 0 aaaa 152 85 0 aaaa 124 86 0 aaaa 194 87 0 aaaa 56 88 0 aaaa 23 89 0 aaaa 135 90 124 aaaa 197 91 123 aaaa bbbb 92 122 aaaa bbbb 93 121 aaaa bbbb 94 120 aaaa bbbb 95 119 aaaa bbbb 96 118 aaaa bbbb 97 117 aaaa bbbb 98 116 131 bbbb 99 0 130 176 100 0 129 175 101 0 128 55 102 0 127 173 103 0 126 172 104 0 125 125 105 0 aaaa 146 106 0 aaaa 207 107 183 aaaa bbbb 108 182 aaaa bbbb 109 181 aaaa bbbb 110 180 aaaa bbbb 111 179 aaaa bbbb 112 178 aaaa bbbb 113 176 aaaa 49 114 175 aaaa 174 115 174 0 54 116 98 0 bbbb 117 97 aaaa bbbb 118 96 aaaa bbbb 119 95 aaaa bbbb 120 94 aaaa bbbb 121 93 aaaa bbbb 122 92 aaaa bbbb 123 91 aaaa bbbb 124 90 aaaa 85 125 0 104 104 126 0 103 58 127 82 102 bbbb 128 81 101 bbbb 129 80 100 bbbb 130 79 99 bbbb 131 78 98 73 132 0 aaaa 165 133 0 aaaa 62 134 0 aaaa 75 135 0 aaaa 89 136 72 aaaa bbbb 137 71 aaaa 0 138 70 aaaa bbbb 139 69 aaaa bbbb 140 68 aaaa 156 141 0 aaaa 166 142 67 aaaa bbbb 143 66 aaaa bbbb 144 65 aaaa 193 145 0 64 64 146 0 aaaa 105 147 0 aaaa 186 148 0 aaaa 157 149 0 aaaa bbbb 150 0 aaaa 68 151 0 aaaa bbbb 152 0 aaaa 84 153 0 aaaa 198 154 0 168 34 155 0 167 210 156 0 166 140 157 0 aaaa 148 158 0 165 209 159 0 164 61 160 0 163 63 161 0 162 206 162 0 161 39 163 0 160 195 164 0 159 77 165 0 158 132 166 0 156 141 167 0 155 bbbb 168 0 154 bbbb 169 0 aaaa 203 170 0 aaaa 44 171 0 aaaa 83 172 0 82 103 173 0 81 102 174 115 80 114 175 114 aaaa 100 176 113 aaaa 99 177 0 aaaa 76 178 112 aaaa bbbb 179 111 aaaa bbbb 180 110 aaaa bbbb 181 109 aaaa bbbb 182 108 aaaa bbbb 183 107 aaaa bbbb 184 0 77 57 185 0 76 29 186 0 75 147 187 37 aaaa bbbb 188 36 aaaa 46 189 35 aaaa bbbb 190 34 33 0 191 33 0 31 192 0 aaaa 59 193 0 aaaa 144 194 0 32 86 195 31 aaaa 163 196 30 aaaa bbbb 197 29 aaaa 90 198 28 aaaa 153 199 27 aaaa bbbb 200 26 aaaa 60 201 25 aaaa bbbb 202 24 aaaa bbbb 203 23 aaaa 169 204 22 aaaa bbbb 205 21 aaaa bbbb 206 20 aaaa 161 207 19 aaaa 106 208 18 aaaa bbbb 209 0 16 158 210 0 15 155