Prediction results legend pp - predicted # of base-pairs cp - predicted # of base-pairs that are correct incp - predicted # of base-pairs that are incorrect pu - predicted # of unpaired bases cu - predicted # of unpaired bases that are correct incu - predicted # of unpaired bases that are incorrect aaaa and bbbb represent that the base-pairing partner is the same as expected. Pairing partner 0 means unpaired. true pairs: 78 true unpairs: 115 pp cp incp pu cu incu ilm 101 76 25 69 68 1 mwm 114 68 46 43 36 7 bac.sub.srp.bpseq ilm.pairs.nogap mwm.pairs.nogap 1 0 aaaa bbbb 2 0 aaaa bbbb 3 271 aaaa bbbb 4 270 aaaa bbbb 5 269 aaaa bbbb 6 268 aaaa bbbb 7 267 aaaa bbbb 8 266 aaaa bbbb 9 265 aaaa bbbb 10 0 264 264 11 0 aaaa 170 12 0 aaaa 36 13 0 aaaa bbbb 14 60 aaaa bbbb 15 59 aaaa 22 16 0 aaaa bbbb 17 0 34 34 18 33 aaaa bbbb 19 32 aaaa bbbb 20 0 31 bbbb 21 0 30 255 22 0 94 15 23 0 51 37 24 50 aaaa bbbb 25 49 aaaa bbbb 26 48 aaaa bbbb 27 47 aaaa bbbb 28 46 aaaa bbbb 29 0 aaaa 44 30 0 21 bbbb 31 0 20 132 32 19 aaaa bbbb 33 18 aaaa bbbb 34 0 17 17 35 0 aaaa 43 36 0 aaaa 12 37 0 aaaa 23 38 58 aaaa bbbb 39 57 aaaa bbbb 40 56 aaaa bbbb 41 55 aaaa bbbb 42 0 aaaa 114 43 0 aaaa 35 44 0 aaaa 29 45 0 aaaa bbbb 46 28 aaaa bbbb 47 27 aaaa bbbb 48 26 aaaa bbbb 49 25 aaaa bbbb 50 24 aaaa bbbb 51 0 23 bbbb 52 0 aaaa 59 53 0 aaaa 110 54 0 aaaa bbbb 55 41 aaaa bbbb 56 40 aaaa bbbb 57 39 aaaa bbbb 58 38 aaaa bbbb 59 15 aaaa 52 60 14 aaaa bbbb 61 0 74 207 62 0 aaaa bbbb 63 0 aaaa bbbb 64 0 aaaa bbbb 65 0 aaaa bbbb 66 0 aaaa 108 67 262 aaaa bbbb 68 261 aaaa bbbb 69 260 aaaa bbbb 70 259 aaaa bbbb 71 258 aaaa bbbb 72 257 aaaa bbbb 73 0 256 256 74 0 61 bbbb 75 0 254 bbbb 76 253 aaaa 0 77 252 aaaa 233 78 251 aaaa bbbb 79 250 aaaa bbbb 80 249 aaaa bbbb 81 248 aaaa bbbb 82 0 aaaa 113 83 247 aaaa bbbb 84 246 aaaa bbbb 85 245 aaaa bbbb 86 244 aaaa bbbb 87 243 aaaa bbbb 88 242 aaaa bbbb 89 241 aaaa bbbb 90 240 aaaa bbbb 91 239 aaaa bbbb 92 238 aaaa bbbb 93 0 aaaa bbbb 94 0 22 bbbb 95 0 237 237 96 0 236 195 97 0 235 221 98 0 233 223 99 232 aaaa bbbb 100 231 aaaa bbbb 101 230 aaaa bbbb 102 229 aaaa bbbb 103 228 aaaa bbbb 104 227 aaaa bbbb 105 226 aaaa bbbb 106 225 aaaa bbbb 107 0 224 193 108 0 223 66 109 0 222 bbbb 110 0 aaaa 53 111 0 aaaa 178 112 0 aaaa 191 113 0 aaaa 82 114 0 aaaa 42 115 0 aaaa 179 116 0 aaaa 172 117 0 aaaa bbbb 118 0 216 142 119 215 aaaa bbbb 120 214 aaaa bbbb 121 213 aaaa bbbb 122 212 aaaa bbbb 123 211 aaaa bbbb 124 210 aaaa bbbb 125 0 aaaa 209 126 205 206 bbbb 127 204 205 158 128 203 aaaa bbbb 129 202 aaaa bbbb 130 201 aaaa bbbb 131 200 aaaa bbbb 132 0 199 31 133 0 197 bbbb 134 0 196 196 135 194 aaaa 234 136 193 aaaa 0 137 192 aaaa 0 138 191 aaaa 222 139 190 aaaa bbbb 140 0 189 189 141 0 186 186 142 185 aaaa 118 143 184 aaaa bbbb 144 183 aaaa bbbb 145 182 aaaa bbbb 146 181 aaaa bbbb 147 0 aaaa 156 148 0 aaaa bbbb 149 0 aaaa bbbb 150 0 aaaa 159 151 0 aaaa 253 152 177 aaaa bbbb 153 176 aaaa bbbb 154 175 aaaa bbbb 155 0 174 174 156 0 aaaa 147 157 0 aaaa bbbb 158 0 aaaa 127 159 0 aaaa 150 160 169 aaaa 0 161 168 aaaa bbbb 162 167 aaaa bbbb 163 0 aaaa bbbb 164 0 aaaa bbbb 165 0 aaaa bbbb 166 0 aaaa bbbb 167 162 aaaa bbbb 168 161 aaaa bbbb 169 160 aaaa 199 170 0 aaaa 11 171 0 aaaa 198 172 0 aaaa 116 173 0 aaaa bbbb 174 0 155 155 175 154 aaaa bbbb 176 153 aaaa bbbb 177 152 aaaa bbbb 178 0 aaaa 111 179 0 aaaa 115 180 0 aaaa bbbb 181 146 aaaa bbbb 182 145 aaaa bbbb 183 144 aaaa bbbb 184 143 aaaa bbbb 185 142 aaaa 224 186 0 141 141 187 0 aaaa bbbb 188 0 aaaa bbbb 189 0 140 140 190 139 aaaa bbbb 191 138 aaaa 112 192 137 aaaa 263 193 136 aaaa 107 194 135 aaaa 0 195 0 aaaa 96 196 0 134 134 197 0 133 206 198 0 aaaa 171 199 0 132 169 200 131 aaaa bbbb 201 130 aaaa bbbb 202 129 aaaa bbbb 203 128 aaaa bbbb 204 127 0 0 205 126 127 bbbb 206 0 126 197 207 0 aaaa 61 208 0 aaaa bbbb 209 0 aaaa 125 210 124 aaaa bbbb 211 123 aaaa bbbb 212 122 aaaa bbbb 213 121 aaaa bbbb 214 120 aaaa bbbb 215 119 aaaa bbbb 216 0 118 235 217 0 aaaa bbbb 218 0 aaaa bbbb 219 0 aaaa bbbb 220 0 aaaa 236 221 0 aaaa 97 222 0 109 138 223 0 108 98 224 0 107 185 225 106 aaaa bbbb 226 105 aaaa bbbb 227 104 aaaa bbbb 228 103 aaaa bbbb 229 102 aaaa bbbb 230 101 aaaa bbbb 231 100 aaaa bbbb 232 99 aaaa bbbb 233 0 98 77 234 0 aaaa 135 235 0 97 216 236 0 96 220 237 0 95 95 238 92 aaaa bbbb 239 91 aaaa bbbb 240 90 aaaa bbbb 241 89 aaaa bbbb 242 88 aaaa bbbb 243 87 aaaa bbbb 244 86 aaaa bbbb 245 85 aaaa bbbb 246 84 aaaa bbbb 247 83 aaaa bbbb 248 81 aaaa bbbb 249 80 aaaa bbbb 250 79 aaaa bbbb 251 78 aaaa bbbb 252 77 aaaa 0 253 76 aaaa 151 254 0 75 bbbb 255 0 aaaa 21 256 0 73 73 257 72 aaaa bbbb 258 71 aaaa bbbb 259 70 aaaa bbbb 260 69 aaaa bbbb 261 68 aaaa bbbb 262 67 aaaa bbbb 263 0 aaaa 192 264 0 10 10 265 9 aaaa bbbb 266 8 aaaa bbbb 267 7 aaaa bbbb 268 6 aaaa bbbb 269 5 aaaa bbbb 270 4 aaaa bbbb 271 3 aaaa bbbb