Prediction results legend pp - predicted # of base-pairs cp - predicted # of base-pairs that are correct incp - predicted # of base-pairs that are incorrect pu - predicted # of unpaired bases cu - predicted # of unpaired bases that are correct incu - predicted # of unpaired bases that are incorrect aaaa and bbbb represent that the base-pairing partner is the same as expected. Pairing partner 0 means unpaired. true pairs: 40 true unpairs: 40 pp cp incp pu cu incu ilm 40 38 2 40 36 4 mwm 55 32 23 10 8 2 b.5.b.E.coli.bpseq ilm.pairs.nogap mwm.pairs.nogap 1 119 aaaa bbbb 2 118 aaaa bbbb 3 117 aaaa bbbb 4 116 aaaa bbbb 5 115 aaaa bbbb 6 114 aaaa bbbb 7 113 aaaa bbbb 8 112 aaaa bbbb 9 111 aaaa bbbb 10 110 aaaa bbbb 11 0 aaaa 109 12 0 aaaa 26 13 0 89 108 14 0 88 24 15 0 aaaa 89 16 68 aaaa bbbb 17 67 aaaa bbbb 18 65 aaaa bbbb 19 64 aaaa bbbb 20 63 aaaa bbbb 21 62 aaaa bbbb 22 61 aaaa bbbb 23 60 aaaa 0 24 0 aaaa 14 25 0 aaaa 52 26 0 aaaa 12 27 0 aaaa 59 28 56 aaaa 0 29 55 aaaa bbbb 30 54 aaaa 98 31 51 aaaa bbbb 32 50 aaaa bbbb 33 49 aaaa bbbb 34 48 aaaa bbbb 35 0 aaaa 104 36 0 aaaa 72 37 0 aaaa 66 38 0 aaaa 75 39 0 aaaa 77 40 0 aaaa 73 41 0 aaaa bbbb 42 0 aaaa bbbb 43 0 aaaa 96 44 0 aaaa 95 45 0 aaaa bbbb 46 0 aaaa bbbb 47 0 aaaa 54 48 34 aaaa bbbb 49 33 aaaa bbbb 50 32 aaaa bbbb 51 31 aaaa bbbb 52 0 aaaa 25 53 0 aaaa bbbb 54 30 aaaa 47 55 29 aaaa bbbb 56 28 aaaa 81 57 0 aaaa bbbb 58 0 aaaa bbbb 59 0 aaaa 27 60 23 aaaa 69 61 22 aaaa bbbb 62 21 aaaa bbbb 63 20 aaaa bbbb 64 19 aaaa bbbb 65 18 aaaa bbbb 66 0 aaaa 37 67 17 aaaa bbbb 68 16 aaaa bbbb 69 0 aaaa 60 70 106 aaaa bbbb 71 105 aaaa bbbb 72 104 aaaa 36 73 103 aaaa 40 74 102 aaaa bbbb 75 101 0 38 76 100 0 bbbb 77 0 aaaa 39 78 0 aaaa 103 79 97 aaaa bbbb 80 96 aaaa 101 81 95 aaaa 56 82 94 aaaa bbbb 83 93 aaaa bbbb 84 92 aaaa bbbb 85 91 aaaa bbbb 86 90 aaaa bbbb 87 0 aaaa 107 88 0 14 120 89 0 13 15 90 86 aaaa bbbb 91 85 aaaa bbbb 92 84 aaaa bbbb 93 83 aaaa bbbb 94 82 aaaa bbbb 95 81 aaaa 44 96 80 aaaa 43 97 79 aaaa bbbb 98 0 aaaa 30 99 0 aaaa bbbb 100 76 0 bbbb 101 75 0 80 102 74 aaaa bbbb 103 73 aaaa 78 104 72 aaaa 35 105 71 aaaa bbbb 106 70 aaaa bbbb 107 0 aaaa 87 108 0 aaaa 13 109 0 aaaa 11 110 10 aaaa bbbb 111 9 aaaa bbbb 112 8 aaaa bbbb 113 7 aaaa bbbb 114 6 aaaa bbbb 115 5 aaaa bbbb 116 4 aaaa bbbb 117 3 aaaa bbbb 118 2 aaaa bbbb 119 1 aaaa bbbb 120 0 aaaa 88